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Identification of genes involved in my pathway

I have done a RNAseq analysis and I know the overrepresented pathways, but I don´t know how to identify the genes that are implicated in each pathway. How can I know it?

Thanks.

kegg keggget
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written by smanzano250800 • smanzano250800

I know the overrepresented pathways, but I don´t know how to identify the genes that are implicated in each pathway

So you know the pathways that are there and simply want to know all the genes that are in that pathway?

One resource: https://reactome.org/PathwayBrowser/

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written by GenoMax GenoMax

I want to know the genes that are up-regulated or down-regulated in my samples, not all the genes that compound the pathway.

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written by smanzano250800 • smanzano250800

Then you can start with the analysis tools section on the main page: https://reactome.org/

There are many other tools GeneSCF (LINK), clusterprofiler (LINK) and DAVID etc.

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written by GenoMax GenoMax

Thank you, but it doesn´t work. I´ll try GeneSCF again.

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written by smanzano250800 • smanzano250800

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