I have multiple lists of species names generated from BLAST for different proteins, and I want to retrieve each list's phylogenetic relationships from a universal common tree for all species.
1) May I know if this was how the NCBI Common Tree generated? (Where we input a list of species names, and it extracts the relevant nodes from a common universal tree.)
2) If the NCBI Common Tree is generated from a universal common tree, may I know if there is a way to use the NCBI Common Tree tool from the command line?
3) If the NCBI Common Tree is not generated from a universal common tree, could you kindly point me to resources where I can do this?
Any input would be greatly appreciated, thank you! :)
•
written
by
fafad046 •
0 answers
No answers yet.
Log in to answer this question.
-
Phylogenetic tree from whole genome using BUSCO
written by manaswiniparija3 •
-
Getting Intron Positions from Amino Acid Sequences
written by fafad046 •
-
Species tree
written by lukhanyomakhabane •
-
How to know if the lineage is a known lineage from a phylogenetic tree?
written by Prakki Rama
-
What's the relation between species colinearity and phylogeny
written by niuzx9581 •
-
convert GCF code to outer leaf Organism name
written by peterlageweg603 •
-
How to make a rooted tree ultrametric
written by nancydong20
-
Phylogentic tree based on Taxon id
written by Sathish •
-
How To Retrieve An Ancestral Sequences In A Phylogenetic Tree?
written by spandankeshav •
-
Msa With Internal Nodes Reconstruction
written by Asaf
It may be best to email NCBI help desk with these questions. Post their response here once you hear back from them.