NCBI refseq ids to uniprot ids
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Since you asked for a command line solution, you can use UniProt API. Examples and help here: https://www.uniprot.org/help/id_mapping
Otherwise use the web based ID mapping tool: https://www.uniprot.org/id-mapping
You can also retrieve the mapping from the file gene_refseq_uniprotkb_collab.gz at the FTP site https://ftp.ncbi.nlm.nih.gov/refseq/uniprotkb/.
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Jiyao Wang •
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