sambamba-depth: All files must be coordinate-sorted error?
I am trying to use sambamba to an indexed whole genome dataset.
basename_X $dataset
f="$(basename_X -- $dataset)"
sambamba depth base -L genomic.bed $dataset> ./reads/"$f.txt"
However, the above script gives the following error.
sambamba-depth: All files must be coordinate-sorted
What is the reason and how can I solve it?
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Pierre Lindenbaum
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MobiusT •
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MobiusT •
1 answer
What is the reason
All files must be coordinate-sorted
how can I solve it?
samtools sort
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Pierre Lindenbaum
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