MACS2 , heatmap
Hello guys, I am doing cut&run analysis for some transcription factors and I have three replicates of BAM files and three replicates of MACS2 output. For downstream studies should I merge three replicates of bam file to plot heatmap? In case replicates are not highly correlated what should I do?
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qudrat.nii •
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That depends what 'downstream analysis' is. You're asked some questions related to this snd in none I see details in the analysis goals.