How to save the digital percentage of `ChIPseeker::plotAnnoPie()` to a table?

Hi : I used ChIPseeker::plotAnnoPie(peakAnnoList) to get the feature distribution plot following the reference: https://guangchuangyu.github.io/2014/04/visualization-methods-in-chipseeker/

enter image description here

How to save the digital percentages to a table? Thanks

chipseeker

• 1,017 views • link

written 3.3 years ago by Dan •

0 answers

No answers yet.

More posts like this

PCA interpretation
written 1.1 years ago by Irving •

I performed a PCA with sequencing data. There are two treatments and two replicates for each treatment. I'm confused about how the samples are grouped, …
plotProfile weird methylation fraction
written 3.3 years ago by Mario •

I am trying to plot a methylation fraction matrix, however i got a weird methylation distribution using TSS as reference point. Could anyone tell me …
How can I plot the heatmap with the fold changes of ChIP-seq occupancy levels of 2 samples using `d…
written 3.5 years ago by Dan •

Hello, How can I plot the heatmap with the fold changes of ChIP-seq occupancy levels of 2 samples using `deepTools`? ![enter image description here][1] [1]: …
umap failed to cluster the cells
written 3.6 years ago by Dan •

Hello I tried umap visualization with [`scanpy`](https://github.com/scverse/scanpy) : ``` sc.pp.scale(adata, zero_center=True, max_value=None, copy=False, layer=None, obsm=None) sc.pp.pca(adata, n_comps=50, use_highly_variable=True, svd_solver='arpack') sc.pp.neighbors(adata, n_neighbors=50) sc.tl.umap(adata, min_dist=0.5, spread=1.0) sc.pl.umap(adata, …
What does PCA results signify?
written 3.7 years ago by prithvi.mastermind •

I have plotted two PCA plots showing expression distribution w.r.t all DEGs and immune DEGs. So, what does the difference in PCA plots signify? A …
export image from cnet plot and bar plot
written 4.1 years ago by Shakiba •

Hi all, I want to save an image from a plot, created by cnetplot in R. \ However, when I use ggsave, it doesn't save …
How to make a TSS enrichment plot in ATAC-seq analysis?
written 4.1 years ago by Dan •

How to make a TSS enrichment plot in ATAC-seq analysis, which shows the TSS enrichment of nucleosome-free fragments, mono-nucleosome fragments, and di-nucleosome fragments? ![enter image …
Plot nucleotides in python
written 4.4 years ago by Lena •

Hello, i'm trying to plot using python: a plot which represents nucleotides distribution. Can't seem to find the appropriate code/function. Would be happy for some …
evaluation of Seurat clustering
written 4.4 years ago by fifty_fifty •

I used two different methods for dimensionality reduction before Seurat clustering. Here are UMAP visualization plots for each of my pipelines. One is denser than …
Can not plot degree distribution in Cytoscape Network Analyzer on logscale
written 4.8 years ago by bhodai •

I am using Cytoscape 3.9.0. When I tried - Tools > Analyze Network, the following window poped-up ![enter image description here][1] When I clicked on …