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How can I plot the heatmap with the fold changes of ChIP-seq occupancy levels of 2 samples using `deepTools`?

Hello,

How can I plot the heatmap with the fold changes of ChIP-seq occupancy levels of 2 samples using deepTools?

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Thanks a lot.

deeptools

1 answer

I'd look at wiggletools to "normalize" your bigwig files prior to plotting the heatmap with deeptools

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