CNA plots with gene names using GISTIC
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Bhaswatee •
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You've asked this same question on the gistic-forum google group as well. Please refrain from cross-posting.
How did you run GISTIC - what parameters did you use?
I ran the analysis with default parameters except for amplification and deletion thresholds at 0.1
Please show us the full command line.
I used the webtool. Will repeat the same using command line and update