poly A in paired end reads

I have a paired end RNA seq and i would like to find sequences with poly A. in what read should I expect the polyA to be? In read 1 or read 2? and should I expect to see polyA or polyT?

polya paired-end

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updated 3.4 years ago by Ram

• written 3.4 years ago by שיר •

They could potentially be in either. See for ways to find poly-A: Identify RNA-seq reads containing polyA sequence

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written 3.4 years ago by GenoMax

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