Bar plots at genera level with absolute percentage difference between two groups in R
I am trying to create the following plot. I tried phyloseq and ggplots but just can't figure this out. if someone could help me
r
• 1,114 views
•
link
written
by
hafiz.talhamalik
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Tool: ggalign: Bridging the Grammar of Graphics and Biological Multilayered Complexity
written by Yun •Excited to announce the release of [ggalign](https://github.com/Yunuuuu/ggalign) 0.1.0!. It offers fine control over layout adjustment and plot annotations, enabling you to create complex, publication-quality visualizations …
-
Prokka Error
written by Maayeesha •![Prokka][1] I have installed prokka in ubuntu as per recommendation in their GitHub repository. But the "local" isn't being created. Previously, when I tried to …
-
bcftools stats not counting samples
written by alba •Hello. I'm trying to view substitutions specific to sample-names from my vcf. I have ran bcftools stats --samples '-' file1.vcf.gz file2.vcf.gz > both_vcf.gz.stats as well …
-
How can I create a sample characteristic/mutation plot in R?
written by db4761 •I am wondering if anyone can help me figure out how to create a plot like this in R to show the characteristics of my …
-
Wrong in Deeptools : the enrichment of TSS and TES region are similar when using scale-region
written by hao •While using plotProfile to create enrichment for a Pol cut-tag dataset, I got similar enrichment peak around TSS and TES which actully will show higher …
-
How to generate Kimura substitution level plots for TE (transposable elements) ?
written by sunnykevin97Hi, Can someone point out a tutorial which helps me to generate the **Kimura substitution plots** from eukaryotic genomes (soft masked - Repeatmasker) ? I …
-
Transcripts Flag
written by mrashadDears, Could you help me to understand the difference between the following tags of transcripts in Ensemble, please ? and which one of them would …
-
PPI-Network igraph for tissue-specific data
written by bi.nb21 •I am new to bioinformatics in general and would really appreciate some help with the project Im working on. My data of protein-protein interactions is …
-
import metaphlan3 output to Phyloseq
written by serene.s •Hi I wanted to import the metaphlan3 results to phyloseq. What I did was that I have extracted only the species names as taxa and …
-
Salmon Script Troubleshooting for RNA Seq Data
written by makylakb •Hello! I am working on a Slurm sbatch bash script to perform RNAseq analysis with Salmon in an HPC environment. I keep receiving the error …
you need to provide the initial data that you are working with as an example
I am using the 16S data, OTUs, taxonomy and metadata. sample data can be loaded using the global patterns sample dataset.