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How to use ClusterProfiler

Hello,

I have been trying to analyze and visualize data using clusterprofiler but still get this error. Is there anyone who has encountered the same problem ? and how did you go about it? Thank youenter image description here

clusterprofiler
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written by ochiengwycliffe5 0

This is an example of my gene symbol;

"11S2_SESIN" , "11SB_CUCMA", "1433_LILLO" , "AAT5_ARATH"
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updated by Ram 4.5K • | written by ochiengwycliffe5 0

What is this? It's for sure not HGNC gene symbols. How was it obtained?

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written by ATpoint 9.1K

They look like sequencing names from UniProtKB Swiss-Prot/TrEMBL. I am not familiar with them, but you definitely need to convert to geneSymbol (maybe after collapsing the entries from the same organisms together??).

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written by fracarb8 176

Yes, they are BLASTX_Sprot_TopHit obtained from an annotation file. I used them because they were easier to run in RASFlow compared to the transcripts i.e transcript24381_f2p60_1851.

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written by ochiengwycliffe5 0

Looks like these are gene ID/symbols from plants so you can't use human gene annotation.

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written by GenoMax 16K

yes, they are for plants. Okay, how can i go about it?

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written by ochiengwycliffe5 0

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