How to use ClusterProfiler
Hello,
I have been trying to analyze and visualize data using clusterprofiler but still get this error. Is there anyone who has encountered the same problem ? and how did you go about it? Thank you
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ochiengwycliffe5 •
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This is an example of my gene symbol;
What is this? It's for sure not HGNC gene symbols. How was it obtained?
They look like sequencing names from
UniProtKB Swiss-Prot/TrEMBL. I am not familiar with them, but you definitely need to convert to geneSymbol (maybe after collapsing the entries from the same organisms together??).Yes, they are BLASTX_Sprot_TopHit obtained from an annotation file. I used them because they were easier to run in RASFlow compared to the transcripts i.e transcript24381_f2p60_1851.
Looks like these are gene ID/symbols from plants so you can't use human gene annotation.
yes, they are for plants. Okay, how can i go about it?