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Genome data visualization

Hi, Please I need help with producing visualization for genomic DNA regions such as seen in these figures I obtained from a publication:

Repeats structure

The other image also shows the regions of a chromosome by color.

chromosome regions

I just need information on the right tools (not IGV) that could make these visualizations.

Thank you.

gff3 bed regions genome
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written by polag01 • polag01

What's the publication? What kind of data do you have? What format is it in? What are you familiar with (R, Python, anything else)?

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written by seidel seidel

So sorry I am just getting back to this, I am only seeing it because I wanted to make another post. Thank you for your response. I am not sure of the publication again, but the data is the repeat content of a chromosome rendered from a bed file. The essence of getting a genomic tool is to account for the size of the genome relative to another, as well as the exact locus of the feature.

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written by polag01 • polag01

1 answer

Hey polag,

It's not really clear to me what is that you need but I would suggest Artemis, it is a nice tool for genomic visualisation, it takes .fasta, .gbk, .gff3 and so. If you want you can color code different features.

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written by SushiRoll • SushiRoll

So sorry I am just getting back to this, I am only seeing it because I wanted to make another post. Thank you for your response. I will check this tool out.

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written by polag01 • polag01

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