PLINK ped file
Hi everyone,
I am trying to run a PLINK analysis with GWAS summary stats. I want to filter the data to get a selection of lead SNPs and use the --clump function of PLINK. I converted the data to map format, but I am missing information to create a ped file that is required by PLINK to create the binary files.
How do I get the information or fill a suitable ped file for the analysis?
Many thanks!
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Fabio Marroni
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loy_loy •
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loy_loy •
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There's documentation on the web.
This can be a good start. This tutorial can also be useful.