GWAS LocusZoom Plot from .CSV
I have GWAS summary stats in the form of a .csv file. I generated the summary stats (ie. Performed association analysis) from the R package SAIGEgds.
I now want to create a LocusZoom plot. How can I use the .csv GWAS summary stats to do this? I was going to use LocusZoom.org
The .csv has chrom pos rs.id pval beta SE ... all the things necessary.
Thanks
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El Rishi •
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abyousaf •
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did you find a solution? i'm having kind of the same problem.