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Filter InterProScan output for a specific function

I am working with metagenomic data.

After running InterProScan (IPS), I want to get only the genes related to a function (for example lipid-active enzymes).

I know that there are some databases that only focus on a group of genes (like CAZy, VFDB,...) but the group I am wondering about doesn't have any database like that.

Can someone tell me the way to filter the IPS output, or is there any other annotation tool providing the filter option?

interproscan annotation

I imagine you can filter on things like E.C. numbers and domain names using bash, awk, R, or some other code.

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