SetAllIdents and Idents function not found
Hello-- I am trying to perform DEG analysis-- differential expression between clusters in an scRNA-seq study. I am very new to MAST however, and when I tried to set the following:
seurat<- Idents(seurat, id = "CellType")
I get an error reading:
Error in Idents(suerat, id = "CellType"): could not find function "Idents".
Any suggestions??
• 911 views
•
link
updated
by
Mensur Dlakic
•
written
by
bioinformatics.girl •
•
written
by
bioinformatics.girl •
1 answer
I did a Google search and the answer is there. Chances are that your Seurat version is too old.
• 0 views
•
link
written
by
Mensur Dlakic
Log in to answer this question.
More posts like this
-
Pseudobulking per patient
written by bio_info •
-
Seurat changing order cluster shown in the violin plot
written by camillab. •
-
scRNAseq Differential expression analysis
written by MVJ •
-
Subsetting ATAC dataset
written by bioinformatics.girl •
-
Differential Expression in Seurat between marker positive cells and marker negative cells in a clus…
written by Alex Gibbs
-
Should I normalize the data before or after filtering to a particular cell type?
written by gt •
-
SingleR annotation of seurat clusters
written by chi.delta •
-
scRNA DE Analysis
written by lucia.liu54 •
-
scRNA-seq : about the sets of non-differential genes between the clusters of cells
written by Bogdan
-
Differential expression of scRNA-seq after Seurat
written by lshepard
