How to screen and select amino acid sequence with 2 motifs from the 30,000 fasta sequences?
I have around 30000 amino acid sequence from transcriptome, I am trying to screen then from with 2 motifs separated by 34 amino acid in one go, but I am not able to do it. Can anyone suggest me any software or online tool to perform this experiment. Thank you
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Have you tried ScanProsite at https://prosite.expasy.org/scanprosite ?
You can download the underlying tool from https://ftp.expasy.org/databases/prosite/ps_scan/ if you want to work with your local database instead of UniProtKB.
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Elisabeth Gasteiger
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