BED file modification
Hello,
I have BED file with all the chromosome coordinates.
I need to remove ChrX, ChrY and ChrM from this file.
Please suggest how this can be done.
Thanks
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Pierre Lindenbaum
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adarsh •
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adarsh •
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awk '(!($1=="ChrX" || $1=="ChrY" || $1=="ChrM"))' in.bed
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Hello,
The toolkit Bedops is very useful. Here you can see how to extract a specific chromosome with the utility "bedextract".
https://bedops.readthedocs.io/en/latest/content/reference/set-operations/bedextract.html