HLA typing with archasHLA - DNA seq?
The HLA typing tool arcasHLA (https://github.com/RabadanLab/arcasHLA) takes RNA-seq data as input. Can you give this tool DNA-seq data?
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Probably not, as they clearly state on their repo
... from RNA sequencing. Have a look atOptiType. It works with both RNA-Seq and DNA-Seq (exome and WGS).