I am starting self-studying molecular dynamic simulation (classic and coarse-grained simulations).With a biological background with no big mathematical or physical background, I started learning Gromacs and want to learn Ambermd (This seems to be uncharted waters to me). They both provide official tutorials but I have a problem with that especially in the case of Ambermd because the tutorials are not organized in a good way and it is meant for many applications, so I can not determine which tutorial suits my case (ligand-protein docking/ protein allosteric regulation study/ study protein pockets).

Could anyone help with an outline of the main points to cover about MDS and coarse-grained simulations?

If there is a long path and a short path for doing so, please provide me with both. I want a short one to start my application ASAP, and need a long path for self-learning and knowledge.

Finally could anyone help me to organize AmberMD tutorials in a manner that helps my case?

Thanks in advance

AMBER MD tutorials: https://ambermd.org/tutorials/