How to conduct linkage disequilibrium analysis in R?
Can someone please provide me some useful tutorial links to perform linkage disequilibrium analysis? I have some significant SNPs from a GWAS study. Now, I want to do LD analysis and create an LD-heatmap using the r-square values. But struggling a bit with how to start. Some tutorials based on HapMap genotype data and in R studio would be helpful. Thank you.
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