How to download Contigs.fasta

I have my contigs.fasta files, how do I download in CSV to be upload to Resfinder

fasta

• 734 views • link

updated 3.7 years ago by Pierre Lindenbaum

• written 3.7 years ago by Tomilola •

Linearize fasta files

• 0 views • link

written 3.7 years ago by Pierre Lindenbaum

0 answers

No answers yet.

More posts like this

AttributeError: module '__main__' has no attribute '/home/bvs/Neelam/resfinder/db_resfinder/'
written 4.1 years ago by Neel •

Hi, does anyone kmow how to solve this error? python3 tests/functional_tests.py -db_point DB_PATH_POINT /home/bvs/Neelam/resfinder/db_resfinder/ -db_res DB_PATH_RES /home/bvs/Neelam/resfinder/db_resfinder/ -k /home/bvs/Neelam/resfinder/kma/kma -b /usr/bin/blastn EE ====================================================================== ERROR: /home/bvs/Neelam/resfinder/db_resfinder/ …
How to download a list pdb codes contained in a csv file using
written 5.4 years ago by jmungar2 •

Hello, I have a csv file containing a few hundreds of PDB codes. I'm trying to figure out how to use Biopython to download these …
How to upload accessory_binary_genes.fa.newick and gene_presence_absence.csv files in Phandango?
written 5.9 years ago by Kumar

I would like to visualise my pangenome results (done by roary) in [Phandango][1]. Since the `drop your data on to begin` option is inactive on …
Reading Multiple CSV files and perform a logistic regression for all those files separately
written 5.9 years ago by paramount.amin •

I am trying to perform a logistic regression analysis on multiple CSV files. All the files have the same column's name ( `DateTime, HvacMode, Event, …
Deleting specific Columns in multiple CSV files using rstudio
written 5.9 years ago by paramount.amin •

Hello Everyone I have a folder, consist of 15000 separate CSV files. All of these csv files have the same heading ( date, time, event,...). …
How to properly analyze following GEO DataSets
written 6.0 years ago by arjuncsubra •

Hi all, I am wondering whether my process for analyzing (and creating clustering maps) for the following two datasets is correct: [GSE150847][1] and [GSE145926][2]. I …
Rename many files to unique names in different directories
written 6.6 years ago by aebartl2 •

I have a large number of directories with unique names. Inside each directory is a contigs.fasta file. I need to rename the contigs.fasta file to …
How to find which genes from my expression data are eGenes for all tissues in GTEX V7?
written 6.6 years ago by anamaria

Hello, I have analyzed around 11000 genes and I would like to know how many of those are eGenes in every GTEX tissue? Can you …
MLST and resfinder analysis got failed
written 9.3 years ago by gskbioinfo143 •

Dear sir/mam, i have query regarding MLST analysis and Resfinder analysis in below servers https://cge.cbs.dtu.dk/services/MLST/ https://cge.cbs.dtu.dk/services/ResFinder/ i have submitted my streptococcus Pneumonia illumina sequenced paired …
Create BED file with restriction enzyme (HindIII) cutting sites of whole chromosome/genome
written 9.6 years ago by peer_wuensche •

Hi there, I would like to display HindIII cutting sites in a genome browser. Ideal would be a bed file or something similar, which enables …