How to upload accessory_binary_genes.fa.newick and gene_presence_absence.csv files in Phandango?
I would like to visualise my pangenome results (done by roary) in Phandango. Since the drop your data on to begin option is inactive on the website, then how can I upload my tree file and csv files for visualisation. Please anybody help me to do the same.
I have performed COG category analysis for the core genes obtained from roary pipeline using [EggNOG Database][1]. Most of the genes were assigned two and …
I have performed the bacterial pangenome analysis using `roary` pan-genome pipeline. However, I do not know how to calculate the `Heaps Alpha value` to find …
I have a fasta file as shown below, rvd.fasta >t1 NI-NG-NR-NN-NG-HD-HD >t_temp5 NG-NG-NI-N*-NR-NI-NN-NG-NG-HD >tal8 NG-NG-NI-N*-ND-NI-NN-NG-NG-H*-NH-NI I have a newick file as follows, tree.newick (tal8:0.49999997,t_temp5:0.47298786,t1:28.37858179); I …
I have done `pan-genome` analysis using `roary` pipeline and I determined that my bacterial genome datasets posses `open-pangenome` based on roary pipeline generated `pan-genome progress …
Hello, I am trying to visualise multiple pathways onto Cytoscape - I load them individually before merging them. However, I encountered a problem whereby the …
I have generated a phylogenetic tree based on the amino acid sequence (28 genes been extracted from 30 bacterial strains and concatenated), which is obtained …