Inter species ortholog identification

Hi All,

Is there a method of identifying all the orthologous proteins between 2 organisms for example E.coli and Staphylococcus?

ortholog

• 799 views • link

updated 3.7 years ago by Ram

• written 3.8 years ago by ttq4 •

Is bioinformatics the only relevant tag you could add to this post? Every question on this website is related to bioinformatics. Please edit your post and add a more specific tag.

• 0 views • link

written 3.8 years ago by Ram

0 answers

No answers yet.

More posts like this

selection of 2 by 2 Chi-square Test
written 3.4 years ago by Binghong •

Hi, I want to check whether there is a significant difference between the proportion of RNA binding proteins in my gene set and the proportion …
BLAST-NCBI
written 4.1 years ago by Mehwish •

I have to find the orthologs of 794 biofilm genes (that a0re taken from different bacteria) in bacillus subtilis subsp str 168 genome and in …
Building a phylogenetic tree from different ortholog groups
written 5.2 years ago by timothy.kirkwood •

Hi all, I have a collection of protein orthologous groups output by orthoMCL. I would like to get some idea of the relationship between these …
Question regarding finding orthologs using proteins of interest and OrthoFinder
written 6.1 years ago by Introvertebrate •

Hello all! I am currently working on a project in which I am trying to identify orthologs in the proteome of my species using a …
Best method for orthology prediction of more than two protein datasets
written 8.1 years ago by ariannapbartlett •

Hello all, Looking for any suggestions on the currently accepted methodology for isolating orthologous proteins from multiple datasets. We are working with eukaryotes who are …
Where can I find the Interpro/OrthoMCL annotation of all the proteins of a species?
written 10.8 years ago by cyril-cros

Hi, I have been doing evolutionary genomics with a few newly sequenced vertebrate species; they have RefSeq annotations supported by RNASeq data, but they are …
Finding orthologous gene within species
written 11.7 years ago by Prasad

Dear all, I have checked many post in biostar and other blogs to find orthologous and paralogous gene identification across/within the species. Most of them …
How To Get Orthologous Gene Id For Another Specie Without Alignment?
written 13.9 years ago by GAO Yang

Hi~ I know that I can retrieve the ID of possible orthologous genes between two species by BioMart. For example, if I set the "dataset" …
Ask Help For All To All Blastp
written 14.2 years ago by juwenting •

I am trying to identify the orthologous CDS groups between different e.coli genomes. One of the ways described in a paper is that using all …
Cog Paralogous And Orthologous Classes
written 14.4 years ago by Zhe Liu •

Dear all, I want to use COG to find the orthologous genes in all bacteria, however I found that COG (EggNOG) not only contains …