BLAST-NCBI
I have to find the orthologs of 794 biofilm genes (that a0re taken from different bacteria) in bacillus subtilis subsp str 168 genome and in staphylococcus aureus UAMS-1, both seperately... keeping in mind e-value of 10^-5... so using the same 794 biofilm genes, it will give me a set of orthologous genes in bacillus subtilis and another set of orthologous genes in staphylococcus aureus... separately so for that I have to run BLAST for each of the 794 genes and it will consume a lot of my time... so is there a shortcut of doing this? or do I have to individually BLAST all of these?
• 910 views
•
link
updated
by
Matthias Zepper
•
written
by
Mehwish •
•
written
by
Mehwish •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Orthologous genes
written by lukhanyomakhabane •
-
Defining background for test of significant overlap of DE genes lists across species
written by dr_cfoster
-
OMA output does not match settings
written by ChrisM •
-
How can I identify all homologues between two fully assembled genomes?
written by ChrisM •
-
BLAST to specify orthologs among genomes,
written by admalleablebronze •
-
How to identify one-to-one orthologs in inparanoid in 20 mammalian species
written by Tom •
-
Functional annotation of B. subtilis
written by mk.applebee •
-
Tools to find the unique proteins (without orthologs) in a bacterial taxon
written by natasha.sernova
-
Ortholog Detection Tool
written by Gorysko
-
The Rna Genes Download
written by Mcdenzlix •
No, just use the command line interface to download. There are also numerous tools 3rd party tools available, e.g. the R package OrthoGene or the Python software JustOrthologs.