GISAID : Selecting 5,000 submissions at maximum.
Can anyone help me in downloading GISAID full database in one go
I am restricted to download only 10,000 sequences.
gisaid
• 1,288 views
•
link
updated
by
Ram
•
written
by
srm.vinay0005 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Inclusivity Analysis SARS-CoV2
written by akitz •Hi! I need to perform a Inclusivity analysis for qPCR primer homology on SARS-CoV2 sequences, mostly for the sequences available through GISAID. I figured out …
-
Forum: GISAID must be called to release EpiCoV data
written by diego1530 •The scientific community is not satisfied with the use of policies being implemented by the German database GISAID. It is disrespectful to restrict the data …
-
how to download data from gisaid ?
written by 2001linana •I was trying to download data from GISAID. Everything works out except only one type of data, which is like 696 MB. When I download …
-
Is it possible to download the full EpiCov database from GISAID?
written by dgarcia54 •Hello everybody! As the tittle of the post says, I need to download all the isolates of SARS-COV-2 from GISAID database... I've been searching for …
-
How can I download a fasta file of all homologs to a given protein?
written by A248 •I have the amino acid sequence of a gene of interest. I want to identify all the different homologs in different species, and assemble it …
-
Pathway annotation using sequence alignment
written by sharmatina189059 •Dear all, I have 3652 bacterial protein sequences . I need to do pathway analysis. I have used BLASTKOALA, KASS, GeneSCF, DAVID and BioCyc for …
-
free article download from pubmed or pmc
written by anithanagaraj93 •Hi, Any one help me out in downloading pdf full free articles from pubmed or from pmc database (both pmids and pmc ids are in …
-
Retrieving batch of selected regions sequences from a NCBI db
written by emilia.skirmuntt •Hi, I was wondering if there is any way of downloading a batch of selected regions from sequences from Genbank. I have several accession numbers …
-
retrieving fasta files from pdb, code
written by fareehakanwal90 •Hello! I want to download some sequences from pdb. i.e. I want to download their fasta files. Downloading one by one is a tedious task. …
-
Bioluminescent Proteins
written by Sara •<p>Dear Friends</p> <p>I am in need of downloading all bioluminescent proteins for some organisms such as human , mouse ,... </p> <p>It seems that Uniprot …
I believe you need to request permission to do bulk downloads. Ask GISAID support.
Maybe you can try Coronavirus GenBrowser (CGB). It not only enables users who have no programming skills to analyze millions of genomic sequences, but also offers a panoramic vision of the transmission and evolution of SARS-CoV-2. https://doi.org/10.1093/bib/bbab583
Moving this to a comment since it is not answering the original question.