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CyKEGGParser error loading from web

Hi,

I'm trying to use the CyKEGGParser app in cytoscape, the app works well when I load a KGML file previously downoaded from KEGG, but it doesn't work when I use the option to load the network from KEGG web load task, a windows appears with the following error message:

Problems Initializing KeggWebLoadFrame Problems connection to https://rest.kegg.jp. Please check your internet connection.

The connection is good, I don't understand what is the reason of this problem.

Anybody have some ideas how to solve this problem?

Thanks in advance.

Elisa

cytoscape

1 answer

Hi,

You could try contacting the App authors listed on this page to see if they can help: https://apps.cytoscape.org/apps/cykeggparser and if that fails there is another Cytoscape App that can import KGML files: https://apps.cytoscape.org/apps/keggscape

chris

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