Converting coordinates using LiftOver from GRCh37 to GRCh38
I have circular RNA coordinates from GRCh37 and i want to convert it to GRCh38 using LiftOver. I am not yet comfortable with doing it by R or Terminal. After doing it simply in my local computer, my coordinates are not the same as my supervisor's one. What might be the reason? Do I need to download fasta or gtf file or anything else?
I am simply using this link below and putting in my coordinates: https://genome.ucsc.edu/cgi-bin/hgLiftOver
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Pierre Lindenbaum
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Nabila •
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Nabila •
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Take a look at this post Liftover vs Ensembl Crossmap. hg19 regions to hg38 using UCSC LiftOver and CrossMap ( on Ensembl).
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Thind amarinder
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