How to convert Uniprot IDs to Ensemble Gene IDs

Hello guys, im new in bioinformatics and i have to get ensemble gene ids. I can convert them on ensembl.org/biomart but i want to do that on a framework.

How can i do that?

ensembl biomart uniprot

• 1,711 views • link

updated 4.0 years ago by GenoMax

• written 4.0 years ago by Recep •

see https://www.uniprot.org/help/api

• 0 views • link

written 4.0 years ago by Pierre Lindenbaum

Just to add to Pierre's answer, you can also do this with the xrefs endpoint in the Ensembl REST API:

Documentation: http://rest.ensembl.org/documentation/info/xref_external

E.g: http://rest.ensembl.org/xrefs/symbol/homo_sapiens/P63151?content-type=application/json

• 0 views • link

written 4.0 years ago by Ben Moore

but i want to do that on a framework.

What framework are you referring to?

If you want to use UniProt's ID mapping tool: https://www.uniprot.org/id-mapping

• 0 views • link

written 4.0 years ago by GenoMax

0 answers

No answers yet.

More posts like this

Convert ensembl ids to gene names
written 1.7 years ago by anasjamshed

I have gene expression data from mouse c2c12(cell line). How can I convert ensemble ids to gene names by using bioMART in R?
Convert Gene Ensemble IDs to Gene Symbols on R
written 3.9 years ago by Amr •

Convert Gene Ensemble IDs to Gene Symbols on R I tried to convert Ensemble Gene IDs to Gene Symbols by using biomart and annotations (org.Hs.eg.db) …
How to use biomart on R to convert Ensembl Gene IDs to Symbols?
written 3.9 years ago by Amr •

How to use biomart on R to convert Ensembl Gene IDs to Symbols? I have a data frame which has many columns, one column has …
biomaRt finding transcript lenghts
written 3.9 years ago by Recep •

Hello everyone, i want to get transcript lengths of my ensembl ids, however this function gives me more than one values for each gene. I …
gene ensemble ID- no symbol
written 5.4 years ago by Rob •

Hello friends, I used this code to convert ensemble gene ID to gene symbol: df <- read.csv("gene_Ens_ID.csv") library('biomaRt') mart <- useDataset("hsapiens_gene_ensembl", useMart("ensembl")) attributeNames <- c('ensembl_gene_id','external_gene_name','description','gene_biotype', …
Converting Ensembl gene IDs to Entrez IDs for indexing gene set collections for doing "Ensemble of …
written 6.9 years ago by Farah

Hello. I am doing ensemble gene set testing with EGSEA (Ensemble of Gene Set Enrichment Analyses) from the edgeR output as follows: > dge <- …
How do transcript-level gene ontology
written 7.8 years ago by lkianmehr

Hello, I do not know exactly how do I with transcript ensemble ID to enter gene ontology. actually, at first, convert all transcript ensemble id …
how can I convert gene symbol to affymetrix IDs ?
written 11.4 years ago by Mo

I have a list of Gene IDs from human, I would like to convert it to Affymetrix IDs. Examples gene IDs ``` GNAI1 HLA-DQA1 WDR1 …
Converting Ensemble Gene IDs from mmseq output file
written 12.0 years ago by Dataminer

Hi, First of all I know there are various tools already available and discussed here on biostar to convert gene IDs, but the problem I …
Converting Protein Names To Gene Ids
written 13.6 years ago by kanwarjag

<p>I have a proteomic data which has protein names and I want to overlay with RNA-seq data based on gene ids (enterz gene id or …