gene pLI score

I am trying to retrieve pLI score for some human genes but I am not able to find a DB of this score. Does anybody knows how to retrieve such data for a specific gene?

gene loss-of-function pli

• 1,681 views • link

updated 4.0 years ago by LChart

• written 4.0 years ago by cocchi.e89

1 answer

The pLI score (now deprecated by the ExAC o/e score). You can pull these tracks (pLI and oe) from UCSC:

https://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=gnomadPLI

and downloaded here:

http://hgdownload.soe.ucsc.edu/gbdb/hg19/gnomAD/pLI/

• 0 views • link

written 4.0 years ago by LChart

More posts like this

Why the list of genes in UCSC "knownGene" table is strikingly different than the list of genes in U…
written 7.4 years ago by lakhujanivijay

Hi, I am trying to generate a `BED` file following the below steps: - Go to human hg19 [UCSC Table Browser][1]: - track: UCSC Genes …
Download Gene Expression Data from UCSC
written 8.1 years ago by landscape95

Hello everyone, I wonder is there any way to download the GTEx Gene gene expression data set with Chia-PET, human, hg19, tissue MCF7, target ESR1 …
Human transposable elements
written 9.1 years ago by Habil

Hi, I need the human transposable element sequences in fasta format. I couldn't find any track on the UCSC [Table][1] Browser that has this information. …
How to extract primates tree model and placental mammal model from vertebrate model in phyloP46way
written 9.1 years ago by Ginsea Chen

Dear All. In the method part of phyloP46way (https://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=cons46way), they said that they extract primates tree model and placental mammal model from the vertebrate model, …
Pseudoautosomal regions (PAR) coordinates in different species, where and how?
written 9.6 years ago by R.Blues

Hello all, I am trying to find the coordinates of pseudoautosomal regions (PAR) in different species, such as human, mouse and rat. So far I …
Genes with "AK#### or BC#####" in UCSC genome browser
written 11.3 years ago by LauferVA

In UCSC's genome browser, in the UCSC genes track, there are genes with names like "AK125749" "BC043543" https://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr16%3A86638082-87389581&hgsid=424735207_Pl93QOaMVxkha4ECPsCKSOrWvb7V Are there other gene appellations like these? …
Where To Find Encode Dnase I Footprint Data
written 12.4 years ago by joshualevipayne

Hello. I would like to download the ENCODE DNase I footprint data for the 41 human cell and tissue types described by Neph et al. …
Exome Variant Server: What Are Those Gaps ?
written 12.6 years ago by Pierre Lindenbaum

Here is a screenshot of the Exome Variant Server data: <img src='http://i.imgur.com/6PfpkHJ.jpg' alt='http://i.imgur.com/6PfpkHJ.jpg' /> Does anyone know what those gaps are ? Some deletions …
How To Select Only One Human Genome Build (Hg19) From The Encode Project'S Data
written 13.6 years ago by Eric Ho •

While I looking on the ENCODE project's data in UCSC Genome Browser I discovered both data from hg18 and hg19 are shown even I only …
How Can I Get The Whole Gene Expression Information In One Cell Line?
written 14.0 years ago by pengcui1989 •

Dear all, I want to get the whole gene expression information in one cell line. And I find that ENCODE has the cell line's RNA-seq …