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non autonomous transposable elements

I want to detect the distribution of different type of non autonomous transposons . detect and annotate deletion and non deletion derivative of autonomous transposable elements. can any one suggest any specific pipelines or tools related to this.

non transposons autonomous
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written by manaswiniparija3 • manaswiniparija3

1 answer

With EDTA you get a GFF as output. If you anntote different genome you can then perform some comparative analysis.

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written by Juke34 Juke34

Ok, Sir, I will try that. and I had another doubt. can I identify the nondeletion derivative of autonomous transposons through this?

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written by manaswiniparija3 • manaswiniparija3

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