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detection of DNA transpsosons

can any one suggest a good pipeline to detect DNA transposons in a assembled Genome ??

dna transposons
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written by manaswiniparija3 6

1 answer

EDTA => https://github.com/oushujun/EDTA

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written by Juke34 949

Dear Sir I was installing EDTA through conda and mamba but encountering an issue " nothing provides blast needed by edta-1.7.7-0" during installation. can you please Guide me how to solve this issue. I am attaching a screen shot of the issue kindly look have a look. enter image description here

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written by manaswiniparija3 6

Try with older python version e.g. python 3.7. You can open an issue in the github repo

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written by Juke34 949

Thank You Sir for your help. now its working.

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written by manaswiniparija3 6

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