This is a test version of Biostars. For the public version, visit https://www.biostars.org.
How can I generate the map.txt file require to detect novel miRNA using miReap

I would like to detect novel miRNA from my miRNA NGS data. I will really appreciate if you would provide suggestions regarding generation of the map.txt file I can use to run the command in miReap. I have used the unmapped_file that I obtained from the alignment to miRBase mature miRNA database and aligned it to my reference genome using Bowtie. I am unable to generate the map.txt file similar to the sample map.txt file given in miReap software test directory. Kindly provide your valuable suggestion.

map.text mirna mirdeep mireap
• 967 views • link
written by khq5801 • khq5801

1 answer

Found solution in this link....mireap procedure short tutorial

• 0 views • link
written by khq5801 • khq5801

Log in to answer this question.

More posts like this