How to learn Scanpy
What is the best resource on learning how to use scanpy for single cell RNA-Seq analysis?
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Prakki Rama
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godwin •
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godwin •
2 answers
Specifically there is a separate web resource called ScanPy Tutorials here:
https://scanpy.readthedocs.io/en/stable/tutorials.html
You can install scanpy and run those tutorials via Google Colab, for example here is a tutorial I am currently developing myself
https://colab.research.google.com/drive/1EwxeDMQ2I3BXPE4h7qRSMju6PFEpLab7?usp=sharing
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Istvan Albert
went on vacation, I plan to continue it once I am back
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Istvan Albert
You can take a look at this best practices online resource from Fabian Theis lab.
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Prakki Rama
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The scanpy vignettes themselves are actually pretty good. Just walk through them and the example analyses and they will cover most of the important processing concepts.