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CTCF sites TAD

Does anyone know a resource or table of annotated TADs in human cells? like a) insulation scores b) CTCF binding motif orientation c) chromatin marks enrichment like H3K36me3

3d genome

1 answer

I think Ensembl has CTCF binding sites but maybe not additional info of relevance to you. Then there's TADKB. The paper describing the TADCompare R package references a few data sets that may also be relevant. You could look for other TAD-related software and see whether they point to useful data sets.

EDIT: forgot to mention that there's some HiC data in ENCODE so there may also be TAD annotations.

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