More posts like this
-
Workflow for functional analysis of differential gene core modules: KEGG, GSEA, and GO enrichment
written by mizzika 0Hello Biostars community, I'm learning about enrichment analysis and would like to validate my approach for identifying the functions of differential gene core modules. Here's …
-
Code for implementation of Network Component Analysis
written by sayakm.biotech 0Hi! I am searching for the MATLAB (or any other programming language) code for Network Component Analysis, proposed in the following paper: Liao et al., …
-
Which tool for clustering (sub-networking) of protein-protein interaction networks based on the Gen…
written by Farah 8Hello, I have a network of 100 proteins (without any quantitative or expression data) which I want to do clustering based on their Gene Ontology …
-
How to validate existing networks with co-expression
written by loic.mangnier.1 1Hello there, I currently work on regulatory network building based on Hi-C and I would like to validate them with a co-expression based approach. Briefly, …
-
Question about WGCNA Module Eigengenes to Pathway analysis
written by Vasu 81I have a very basic question for co-expression network analysis. I'm using WGCNA. I got 34 modules as output. After this, I calculated their eigengenes …
-
Network construction methods using Bayesian Network or mutual information
written by zhang.jianhai 3Hello, I want to use Bayesian Network (BN) or Mutual Information (MI) based R packages to construct gene network. I have checked BNArray and CLR, …
-
Finding a way to comparison induced cells and real tissue by Cytoscape!
written by Calangoa 3Hi, I have some gene expression data from induced cells by some small molecule in vitro (different kind of small molecules in different data sets) …
-
WGCNA module interpretation question
written by Anny 3I am using WGCNA to generate gene co-expression network. I am confused about the how to interpret gene module colors. My understanding is, different modules …
-
Comparison of module expression across WGCNA networks
written by dmcleanuk 3Hello, I'm performing a WGCNA analysis in a set of control and disease samples. My main objective is to associate module eigengenes with some traits, …
-
How to model transcriptional networks from gene expression time-course data
written by ' 34I have a small dataset containing five genes and their expression at 20 different time points, I want to construct the transcriptional regulatory network based …