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Need help in finding pseudo genes using python script

Hello Everyone,

I have a genome file in gtf format. I want to find all the pseudo genes from that genome file. Can anyone help me with a python script which can do this work?

Thank you

ngs python genomics

What have you tried so far? There are a couple general approaches for doing this, typically they have different efficacy for different datasets. Anything else you can tell us about your pre-processing?

Hi, I have tried normal Linux shell scripting, grep command. But it would be better if I can do it with python.

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