Generating barplot of fpkm value
Hello, I want to generate a barplot of fpkm value count, for specific genes, to have finally the graph showing, which cells have high expression of specific gene. All I have is fpkm count file from NCBI, in txt format. Can anyone please suggest how to proceed, I am totally noob in this, so could not understand what to use for plotting.
( Preferably in python, but can be do in R too. )
I will be highly grateful for your help. Thank you in advance
• 1,691 views
•
link
written
by
sidrah.maryam •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Count Matrix normalisation for downstream analysis and for creating heatmap of targeted genes
written by Vikram •
-
GTEx RNA-seq data
written by rheab1230 •
-
Converting hdf5 file to loom file
written by sidrah.maryam •
-
Separating each cell in fastq file
written by sidrah.maryam •
-
Plotting non-zero values along rows in python
written by sidrah.maryam •
-
How to plot Raster plot
written by sidrah.maryam •
-
Can we directly correlate FPKM/TPM to expression?
written by Arindam Ghosh
-
Gene expression comparison of Cancer and Normal tissue
written by evocanres •
-
TMM - Normalized FPKM values for RNASeq data ?
written by gangireddy
-
RNA seq differential analysis for multi samples and multi replicates
written by peris
Can you include some example data in your post for what the contents of the text file look like?
It is like, I have genes as rows and cells as columns, and the expression matrix. It is basically the output of cufflink.
Actuallly whole question is: There are two categories of cells, and their expression matrix. I have to compare the aggregate fpkm values of specific genes in both types of cell, by plotting bar graph. (where each cell type has numerous cells)
Do not add an answer unless you're answering the principal question. Use
Add ReplyorAdd Commentappropriately instead.