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How to search and identify the function of DEGs

How to retrieve and identify the function of DEGs? What are the different types of tools available?

function functional annoatation degs
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updated by Marco Pannone • Marco Pannone • written by Roy.anupama11 • Roy.anupama11

1 answer

For GO/pathway analysis and GSEA (as mentioned in a previous reply) I've always found webgestalt really easy to use.

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written by rachel.walters.18 • rachel.walters.18

On WebGestalt you perform a pre-ranked GSEA, where you input already computed logFC values for each gene. In a proper GSEA you instead input a matrix or normalized read counts with all genes as rows and all replicates as columns.

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written by Marco Pannone • Marco Pannone

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