I have been searching for this on-and-off for many months. Basically, I am looking for FASTQ or BAM files (preference for Illumina) of multiple samples of a diploid organism, where there is also a "gold standard" or "benchmark" set of validated SNPs for each sample. The SNPs should not be validated with another high-throughput/next-generation sequencing platform, but with an orthogonal technology, like Sanger sequencing or microarray analysis. Any diploid organism is welcome. Since I would like data from at least 3 distinct samples, the sample data can be from the same pedigree and/or come from different sources/labs.
Thank you for your consideration!