SARS-CoV-2 lineages complete reference genomes

Hi, does anyone know if there is any website where we can search and download the clean and complete reference genomes of all SARS-CoV-2 pnago lineages? For example, we can search AY.4 and BA.1 and BA.2 lineages and download their reference genomes? Thanks!

sars-cov-2 complete genomes reference lineages

• 1,545 views • link

updated 4.2 years ago by GenoMax

• written 4.2 years ago by arash.iranzadeh1980 •

I don't know if the following two resources are going to provide reference genomes. You may have to go to GSAID for that.

• 0 views • link

written 4.2 years ago by GenoMax

2 answers

At NCBI SARS-CoV-2 resource page. Be sure to switch to Nucleotide tab and then click on pango lineage search.

Pango

• 0 views • link

written 4.2 years ago by GenoMax

From EBI: https://www.covid19dataportal.org/sequences?crossReferencesOption=all

EBI

• 0 views • link

written 4.2 years ago by GenoMax

More posts like this

PATRIC vs. RefSeq annotation for SARS-CoV-2
written 3.1 years ago by vembha •

Hello, I am trying to perform phylogenetic analyses using SARS-CoV-2 genes, like ORF1a and membrane for instance. On the bv-brc.org repository's website, gene sequences are …
Get cleaved SARS-CoV-2 protein sequences (all major variants)?
written 4.1 years ago by ngarber •

I have an algorithm for assessing the presence of a degenerate motif in lists of protein sequences, and I would like to run it on …
Swiss model for virus
written 4.5 years ago by Rob •

Hi friends I created a SWISS-MODEL(here:https://swissmodel.expasy.org/) for spike/surface glycoprotein amino acid of Cov-2. I downloaded a fasta file (here: https://www.ncbi.nlm.nih.gov/sars-cov-2/) and used in in modeling. …
Customized reference genome (virus genome added)
written 4.6 years ago by kimmitzka •

Hi all, Recently I have read some paper related to SARS-Cov-2. For some RNA-seq analysis, there was usually saying that the human reference genome also …
Spike proteins sequences of all variants of Covid
written 4.7 years ago by anasjamshed

I want to download Spike proteins sequences of 11 variants of the corona: 1) Alpha (B.1.1.7 and Q lineages) 2) Beta (B.1.351 and descendent lineages) …
Sequence Retrieval of SARS-CoV Complete Genomes
written 5.7 years ago by pfee418 •

Hi guys, I hope to only retrieve complete virus genomes on SARS-CoV (not SARS-CoV-2) and its strains. I tried to retrieve in NCBI Virus database …
Selection of Sequences
written 5.7 years ago by pfee418 •

Hi guys, I'm currently will be doing comparative genome analysis of human coronaviruses (including SARS-CoV-2, SARS-CoV and MERS-CoV). I will be including strains of each …
possible bioinformatics research topics concerning SARS-CoV-2
written 5.7 years ago by 2001linana •

I am a researcher on SARS-CoV-2. The more I work on it, the more I find it interesting. Yet, interesting does not mean feasible, doable, …
Tutorial: introduce a tool for fast identification of SARS-CoV-2 and other microbes from sequencing…
written 6.4 years ago by chen

These tools and resources have been published in `Briefings in Bioinformatics`: https://academic.oup.com/bib/advance-article/doi/10.1093/bib/bbaa231/5917007 fastv is an ultra-fast tool for identification of SARS-CoV-2 and other microbes from …
Tool: A resource with diverse databases and tools for SARS-CoV-2 (COVID-19) bioinformatics -- Updat…
written 6.4 years ago by Michael

Dear bioinformatics and genomics community We are in the process of setting up resources helpful for bioinformatics/genomics analyses related to SARS-CoV-2 (COVID-19). So far we …