I have .vcf file with over 78000 variations in 95 experiment subjects. I used vcftools to extract fixation index score for general differentiation between Case …

Hi, I am doing data analysis on .vcf file related to case/control study related to schizophrenia humans. For general differenciation between Case/Control groups I picked …

For Fst which is HT-HS/HT, HT stands for expected average heterozygosity in the meta population and HS stands for expected average heterozygosity in the sub …

Hello, I know that the Wright's Fixation Index (Fst) can range between 0 and 1 and for pairwise Fst is the same meaning that 0 …

Hi all, I used vcftools for calculation the Fst value between two populations (pop1 and pop2) using the below command: ./vcftools --vcf file.vcf --weir-fst-pop population_1.txt …

I have fixation index statistics (FST) for approximately 4 million loci, genome-wide. I would like to calculate a 5% FDR threshold in order to select …

<p>Hello,</p> <p>I calculated Fst values for a few genes in my genome pairwise between a couple of isolates.</p> <p>It seems some of the genes have …

<p>Hi, I was wondering what to do with F_ST (the fixation index) when the two populations are different. How does it change the calculation of …

<p>I am encountering difficulty selecting a statistic to compare two distributions of Weir &amp; Cockerham's Fst. While I know the distribution is non-normal for the …

<p>Hi all,</p> <p>I have a tab delimited file with the following columns:</p> <pre><code>CHR SNP bp Fst </code></pre> <p>where Fst is the <a href='http://en.wikipedia.org/wiki/Fixation_index'>fixation index</a>. Does …