Genome Reference Consortium Human Build - Transcriptome Size Query

Hi All,

I was wondering where I might find the approximate transcriptome size of the latest Genome Reference Consortium Human Build (GRCh38.p14)?

https://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.40

Thanks for your help!

grc

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updated 3.4 years ago by Ram

• written 4.3 years ago by Oligo96 •

You don't have to estimate it. Download the latest and most up-to-date transcripome annotation for human, e.g. from GENCODE https://www.gencodegenes.org/human/ and then simply count what you would like to know, be it number of genes, total bases, number of transcripts, exons, you name it.

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written 4.3 years ago by ATpoint

Thanks! Do you recommended any resources that will enable me to explore and pull readouts from GTF files?

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written 4.2 years ago by Oligo96 •

This page will be a good starting point: https://www.ncbi.nlm.nih.gov/data-hub/taxonomy/9606/

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written 4.3 years ago by vkkodali_ncbi

Thank you!

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written 4.2 years ago by Oligo96 •

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