KOBAS - Soybean (Glycine max)

Hello, is anybody aware of what gene ID format is supported for soybean (Glycine max) in KOBAS?

It seems that the system does not support the standard Wm82.a4.v1 (Glyma 4.0) assembly (Glyma.01G175600, Glyma.01G228400,Glyma.03G214500 ..).

Server link -> http://kobas.cbi.pku.edu.cn

go kobas gene enrichment annotation

• 576 views • link

written 4.3 years ago by GlycineMax •

0 answers

No answers yet.

More posts like this

Cromwell slurm singularity call caching
written 2.4 years ago by asmariyaz23 •

Hello I have been using singularity within cromwell conf and now want to enable call-caching. I do not have internet on any of the cluster …
Job: Computational Project Scientist
written 5.0 years ago by BerkeleyLab •

**Computational Project Scientist - 93507 Organization: MB-Molecular Biophys & Integ Bio** Lawrence Berkeley National Lab’s (LBNL, https://www.lbl.gov/) Molecular Biophysics and Integrated Bioimaging Division has an …
Job: Automation Engineer
written 5.0 years ago by BerkeleyLab •

**Automation Engineer - 93365 Organization: BE-Biological Systems & Eng** Lawrence Berkeley National Lab’s (LBNL, https://www.lbl.gov/), Biological Systems and Engineering Division (https://biosciences.lbl.gov/divisions/bse/) has an opening for …
Job: Research Scientist in Bioinformatics - Brigham and Women's Hospital, Harvard Medical School
written 6.4 years ago by Xianjun

**Position**: Research Scientist in Bioinformatics **Location**: Genomics and Bioinformatics Hub, Department of Neurology, Brigham and Women’s Hospital, Harvard Medical School We are looking for a …
Aspera ENA download: errors and permissions?
written 8.1 years ago by f.a.galkin •

I am trying to download 20TB of metagenomic data from ENA. However their standard ftp service hardly ever reaches 400KB/s and it would take me …
Please help to address the BiocCheck NOTEs
written 8.3 years ago by Pijush Das •

Please see the notes produced by the BiocCheck after run the BiocCheck function. >This is BiocCheck version 1.15.9. BiocCheck is a work in progress. Output …
News: Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian …
written 9.4 years ago by Physalia-courses

RNA-seq analysis: our interview to Brian Haas. https://www.physalia-courses.org/news/n6/ Posted on 08 March, 2017 by Marianna Pauletto RNA-Seq (RNA sequencing), has revolutionized the manner in which …
MAKER annotation gives weird results
written 9.8 years ago by int11ap1

I am performing a gene annotation on an assembly and, for a specific loci, I have the following support: ``` Pp05 blastn expressed_sequence_match 11506941 11508983 …
Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers (Dec 2017)
written 10.5 years ago by CandiceChuDVM

Hi all, I am a PhD student with biology background. I recently inherit a RNA Sequencing project from another PhD student in my lab. We …
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
written 12.0 years ago by EagleEye

<img src="http://genescf.kandurilab.org/pics/genescf_logo_v2.png" height=70, width=100># Gene Set Clustering based on Functional annotation ====================================================================== GeneSCF serves as command line tool for clustering the list of genes given …