How do I search for miRNA target seeds using command line mirtarbase?
Hi everyone,
I have a bunch of nucleotide sequence fasta files which I want to search against Drosophila mirtarbase folder in the HPC. I would appreciate if someone can help me how to do this in the cluster. I am looking for miRNA seeds in the nucleotide sequences of interest.
Thank you in advance
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If you want to search for potential miRNA targets, you should consider using tools for a such purpose, like TargetScan, DIANA tools, miRDB, etc.