Get annotations for a list of SNPs with R
What is fastest way in R to get gene annotations for a list of 134 SNPs? The SNPs are given in CHROM:POS format. For example: 6:31930462, 19:45395619. *GRCh37
• 482 views
•
link
written
by
dolphiness •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Extract bfile from .bgen using a given .bim to handle duplicated snps
written by yang1641 •
-
How to get all genes and their annotations within a LD block?
written by b.g.tamang •
-
Issues with identifying chromosomes for a list of SNPs
written by ks.sholohova •
-
How to go from a fasta file to an annotated genome assembly in genbank format?
written by vixelaa •
-
Is there a GRCh37 equivalent of EnsDb.Hsapiens.v86 or some other method for getting a complete list…
written by SpacemanSpiffo •
-
Tag SNPs - how to easily and effectively select them
written by F_cm_C •
-
using biomaRt in R to annotate SNPs to Genes within 1000kb
written by Sheila
-
chromosomal cordinates of a list of genes
written by bioguy24
-
New to statistical genetics--need advice for calculating LD starting with genomic regions
written by DaveC •
-
Programatically accessing RCSB-PDB
written by Bioaln
