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How to get all genes and their annotations within a LD block?

Hi all, Thank you for your help. I identified several significant SNPs with GWAS in wheat. Next, I want to get all the genes form the haploblock where the SNPs reside. Using Emsembl, I was able to see the gene names but I could not find a way to get all the genes in a list along with their annotations. Is that possible in Emsembl? Is there any other way to do it?

Your help is much appreciated.

gwas haplotype snps genome wheat ensembl
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written by b.g.tamang • b.g.tamang

1 answer

The easiest way would be BioMart. There's a help video to get you started - it uses human as the example but the principle is the same.

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written by Emily Emily

Thanks a lot Emily. I will check it out.

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written by b.g.tamang • b.g.tamang

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