Comparing top SNPs in GWAS · Biostar

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Comparing top SNPs in GWAS

Hello,

I have the summary data from two genome wide association studies of related traits. I want to compare the two gwas, to find if there is an enrichment of SNPs below a certain P-value form GWAS 1 in GWAS 2. Does anyone know of any software or paper to go about this? I get the feeling that I'm looking for a hypergeometric test of some sort.

Any help will be greatly appreciated.

Thanks,
V

genome

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updated 4.5 years ago by Ram

• written 11.7 years ago by Varun •

Hi there, did you ever find a way to compare (or assess the difference) two sets of GWAS p-values?

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written 9.2 years ago by A. Blizzard •

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