chromosomal cordinates of a list of genes
Can a list of genes (134) be submitted to ucsc genome browser and the chromosomal cordinates in hg19 be returned for each gene in the list or is there a better way? Thank you :).
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Giovanni M Dall'Olio
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bioguy24
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bioguy24
3 answers
Use Biomart for that, quick and a multitude of options. Check the tutorial out.
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Sukhi Singh
This has already been answered many times. Have a look at the Homo.sapiens package in bioconductor, then use the genes() on the TxDb object.
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Giovanni M Dall'Olio
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Via Table browser, likely. Have you checked in hg19 GTF file first?
you can use biomart from ensembl being carefull of genome selection here the link for hg19 http://grch37.ensembl.org/biomart/martview/8870bd61f1b936f0eaa6e843a4fe1def
it is a friendly interface.
This is exactly what you are looking for.