Hi, I am trying to get plink format of gt call file (call code file) using apt-format-result and i am getting the map file as …

Hello, I am stuck at the initial step in the PennCNV CNV calling pipeline ie step 1.1 - generating genotype calls from raw CEL files. …

I want to use a specific APT program/application on linux, ie `apt-midas`. The APT tools can be found here: https://media.affymetrix.com/support/developer/powertools/changelog/index.html I've installed APT using `wget` …

Hi all, As a preface: I am not very familiar with genetics/genetics processing/bioinformatics as this is not normally the side of work I'm on. So …

Hello, I am trying to run apt-probeset-genotype from: https://media.affymetrix.com/support/developer/powertools/changelog/apt-probeset-genotype.html My data is: Affy500K They say there that: " For Mapping 500K data the recommended per-chip …

Dear all, I'm new to CNV analysis and am trying to analyze CNV between 5 cancer cells and 5 normal cells. The data is from …

Hello everybody! It is my first time working with the Affy Human Exon St. 1.0. I use [Affymetrix Power Tools](http://www.affymetrix.com/support/developer/powertools/index.affx) (APT) and R to do …

I have a `*.CEL` file which is obviously in [generic CEL file format][1]. To handle it more easily I would like to read it with …

Howdy y'all, I'm having a hard time intrepreting the cychp format. Here's the affy documentation but it doesn't tell me what the symbols in the …

<p>I am trying to code my own routine to extract probe set information from the CDF for the Human Gene 1.0 ST Array <a href='http://www.affymetrix.com/estore/esearch/search.jsp?Ntt=cdf&amp;basic=1'>http://www.affymetrix.com/estore/esearch/search.jsp?Ntt=cdf&amp;basic=1</a></p> …